It would be nice to be able to have check boxes available in Options or just before the document build where you could turn on/off the generation of certain Quick Links. For example, if you don't want the SQL Script to be generated, then the SQL Script link and the SQL Script section would not be generated.
Also, on the tree node, if you are using the MS_Description extended property, it would be nice if you could have the option to display the table description instead of the physical tabe name in the Table nodes. I like how the table description is displayed when you expand the node and the column descriptions are included in the column table.
These are just a couple of items we would like to see in the future. We've been looking for a good SQL Server database documenter and this one has beat everything we've seen hands down and looks like you are just getting started with it. I'm sure the best is yet to come.
Thanks for listening to your potential customers.