After branching our development trunk (in Subversion), the migration scripts seem to be no longer included. I first reasoned that this was due to the fact that the '.migrationScript' files refer to the source control location of the scripts they were created for (which still points to trunk), but editing these to point to the branch does not seem to fix it.
Using the SQL Source Control 3 UI, I can't recreate the migration scripts as the revisions prior to branching our not available for selection. Could it be that SQL Compare is also now only looking for migration scripts for the branch-specific revisions only (i.e. not considering the original trunk revisions)?