Many thanks for your post.
This is a known issue with the SQL Compare engine and is logged under reference number SC-4582.
Unfortunately, as this is an issue with the parser, I'm not sure how quickly we will be able to fix it. Any fixes to the parser touch quite a lot of code, so it probably wouldn't be safe to issue a 'quick fix' in this situation.
As a workaround though, you may be able to 'comment out' the line in the script. If you haven't got too many instances of this problem, then it might work as a temporary fix until will release a version that supports the syntax.
I have added this post to the bug report and will let you know when we have an updated version of the SQL Compare engine that supports this.
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