The only advice I can give you is to try it and let us know if you come across any hurdles. If you have config data that you want to store alongside your source controlled schema, you can achieve this using SQL Data Compare Pro. This is described here:
• Source control static data
using SQL Data Compare Pro
Deployment is achieved using a combination of SQL Compare Pro and SQL Data Compare Pro, or you can build it into your build process.
• Automate your database builds
using SQL Compare Pro and SQL Data Compare Pro
If you hit any issues, we'll be happy to discuss these with you. What you describe is exactly the problem we are attempting to solve in this tool.